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gecGrid: Gene Expression Correlation Grid

This server presents the pairwise gene expression correlation for two or more genes. For a set of genes you can get all the pairwise correlations and express it as a matrix, graphically display it. The standard color scheme values in the matrix are shaded red for positive coexpression, green for negative coexpression. However, we have 2 other color schemes available.

The "Annotation searches" list at the right is a set of grid images for TB genes clustered by annotations as defined by SWISS PROT. If you have any suggestions on what can be done to improve this server, please contact us.

We have a new server for further searching and browsing these expression correlctaion data. Please click here to view this page.

1a. Enter a list of ORFs separated by commas
1b. Or choose from this list
1c. Or you can select 1 gene from the list and request a grid of genes starting on your selected gene
Choose 50  100   150   180 genes to display   [more info]
1d. Or you can upload a file containing a list of Genes (ORFs), 1 per line, please
2. Measurement data set combined data set:compiled from 4 datasets referenced below
Boshoff et al. 2004: reference
3. Color scheme green → red   blue → green   red → blue  
List of Annotation searches
ESAT-6 T-cell antigen family
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Mammalian cell entry family
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3D-structure
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ATP-binding
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DNA-binding
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Hydrolase
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Ligase
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Lyase
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Membrane
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Metal-binding
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Nucleotide-binding
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Oxidoreductase
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Signal
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Transcription
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Transcription regulation
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Transferase
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Transmembrane
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Transport
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